Journal of Chemical Physics 2008-04-28

Theoretical and spectroscopic study of infrared spectra of hydrogen-bonded 1-methyluracil crystal and its deuterated derivative.

Marek Boczar, Jacek Kwiendacz, Marek J Wójcik

Index: J. Chem. Phys. 128(16) , 164506, (2008)

Full Text: HTML

Abstract

Theoretical simulation of the band shape and fine structure of the N-H(D) stretching band is presented for 1-methyluracil and its deuterated derivative taking into account anharmonic coupling between the high-frequency N-H(D) stretching and the low-frequency N...O stretching vibrations, resonance interaction between two equivalent hydrogen bonds in the dimer, anharmonicity of the potentials for the low-frequency vibrations in the ground and excited state of the N-H(D) stretching mode, Fermi resonance between the N-H(D) stretching and the first overtone of the N-H(D) bending vibrations, and electrical anharmonicity. The effect of deuteration has been successfully reproduced by our model calculations. Infrared, far-infrared, Raman, and low-frequency Raman spectra of the polycrystalline 1-methyluracil have been recorded. The geometry and experimental frequencies are compared with the results of harmonic and anharmonic B3LYP6-311++G(**) calculations.


Related Compounds

Related Articles:

Orotic acid decarboxylation in water and nonpolar solvents: a potential role for desolvation in the action of OMP decarboxylase.

2009-09-15

[Biochemistry 48(36) , 8738-45, (2009)]

Thermodynamic, kinetic and structural studies on the ternary palladium(II) complexes of thioether ligands.

2000-04-01

[J. Inorg. Biochem. 79(1-4) , 129-38, (2000)]

Pulse radiolytic studies of radicals produced from methylated uracils via oxidation by SO4..

1988-05-01

[Radiat. Res. 114(2) , 207-14, (1988)]

Assessment of hepatic tissue blood flow with 133Xe clearance technique.

1981-01-01

[Int. J. Nucl. Med. Biol. 8(1) , 77-84, (1981)]

Modeling of reaction steps relevant to deoxyuridylate (dUMP) enzymatic methylation and thymidylate synthase mechanism-based inhibition.

1998-02-01

[J. Biomol. Struct. Dyn. 15(4) , 703-15, (1998)]

More Articles...